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Pull requests: biopython/biopython

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Pull requests list

Fix vector test for NumPy 2.4
#5161 opened Feb 12, 2026 by peterjc Loading…
3 tasks done
1
3
No nested array access; keep angles as floats; more type annot
#5160 opened Feb 12, 2026 by peterjc Loading…
3 tasks done
2
Pdbparser thread safety
#5158 opened Feb 8, 2026 by kirandharmar867-maker Loading…
1
2
Fix PDBList URL construction for non-RCSB Mirrors
#5157 opened Feb 4, 2026 by kirandharmar867-maker Loading…
1
5
Feat: Add NetworkX adapter for PDB NeighborSearch results
#5155 opened Jan 25, 2026 by dipankatanu Loading…
4
Add timeout support to NCBIWWW.qblast
#5152 opened Jan 25, 2026 by dipankatanu Loading…
2
Fix residue depth subprocess : Modernize process execution in ResidueDepth using subprocess.run
#5150 opened Jan 25, 2026 by dipankatanu Loading…
1
Fix Entrez.Parser.DataHandler URL security check continuity (related to #5109 and #5114)
#5148 opened Jan 25, 2026 by hartwork Loading…
3 tasks done
1
14
bwl1289/fix/5137/undefined-symbols
#5141 opened Jan 13, 2026 by BwL1289 Loading…
3 tasks done
1
1
Fix Numpy 2.4 compatibility in PDB/vectors.py
#5138 opened Jan 9, 2026 by Augustin-Zidek Loading…
3 tasks done
1
14
Added PERMISSIVE argument to MMCIFParser as in PDBParser.
#5134 opened Jan 6, 2026 by piecole Loading…
3 tasks done
5
Added depreciation error to MMTFParser.get_structure_from_url since RCSB no longer serves MMTF
#5129 opened Jan 2, 2026 by piecole Loading…
3 tasks done
@JoaoRodrigues
1
make sure that polar_angle is initialized even if the radius is zero,…
#5127 opened Dec 26, 2025 by mdehoon Loading…
3 tasks done
2
Add editable install warning
#5124 opened Dec 23, 2025 by ACA103 Loading…
6
Improve performance of MMCIFParser
#5121 opened Dec 17, 2025 by ozan Loading…
3 tasks done
6
chore: add type annotation to Bio/File.py
#5088 opened Oct 24, 2025 by szabgab Loading…
3 tasks done
5
Add type annotations
#5087 opened Oct 24, 2025 by szabgab Loading…
12
Complete C acceleration for melting temperature calculations
#5085 opened Oct 15, 2025 by rhowardstone Loading…
8 tasks done
15
Add __next__ method to FastaTwoLineIterator
#5078 opened Oct 13, 2025 by vihaankulkarni29 Loading…
3
Add support for terminal_columns in Alignment formatting, issue 5035
#5070 opened Sep 19, 2025 by data2code Loading…
1 task
1
30
Added subpopulation function and validation logic
#5042 opened Aug 16, 2025 by timlee-bioinf Loading…
3 tasks
@tiagoantao
1
Add SeqIO read/write support for NCBI 5-column tab-delimited feature tables
#5032 opened Jul 21, 2025 by michaelfm1211 • Draft
3 tasks done
1
3
Replaced print with warn/stderrs in NCBIXML.py
#5030 opened Jul 17, 2025 by head-ease08 Loading…
3 tasks done
1
17
Add option to ignore N-/C-terminus effects in isoelectric point calculation
#5022 opened Jun 27, 2025 by FriedLabJHU Loading…
1 task
2
Accelerated motif search algorithms on dna sequences
#5016 opened Jun 19, 2025 by quim6 Loading…
3 tasks done
8
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